University of TehranJournal of Sciences, Islamic Republic of Iran1016-110433120220301Optimization of Synthetic Glucose Oxidase Gene Using A Recombinant Combination Strategy in Pichia Pastoris GS1155188532810.22059/jsciences.2022.332679.1007682ENMelikaFasihi1- Molecular Medicine Group, Medical Biotechnology Deapartement, National Institute of Genetics and Biotechnology, Tehran, Iran
2- Faculty of Basic Sciences, Islamic Azad University, Science and Research Branch, Tehran, IranS. Sh.Rahpeyma¹ Department of Molecular Medicine, Institute of Medical Biotechnology, National Institute of Genetic Engineering and Biotechnology (NIGEB), Tehran, Islamic Republic of Iran
³ Department of Bioprocess Engineering, Institute of Industrial and Environmental Biotechnology, National Institute of Genetic Engineering and Biotechnology0000-0002-2371-8387Ali AsgharKarkhanei³ Department of Bioprocess Engineering, Institute of Industrial and Environmental Biotechnology, National Institute of Genetic Engineering and Biotechnology0000-0002-3521-0409JamshidRaheb³ Department of Bioprocess Engineering, Institute of Industrial and Environmental Biotechnology, National Institute of Genetic Engineering and Biotechnology² Faculty of Basic Sciences, Islamic Azad University, Science and Research Branch, Tehran, Islamic Republic of IranJournal Article20211028Glucose oxidase (e.C1.1.3.4) is a flavoenzyme that catalyzes the oxidation of β-D-glucose to D-gluconolactone and hydrogen peroxide. The D-gluconolactone hydrolyzed spontaneously produces gluconic acid. Glucose oxidase has been widely used in chemical, food industries, and medicine. In this study, the glucose oxidase gene was identified in the chromosomal DNA of Aspergillus niger and isolated by PCR techniques. The glucose oxidase gene was then synthetically designed, optimized, cloned, and transferred into suitable hosts. The constructed clones were selected to modify the best production and combined promoter systems to produce glucose oxidase enzymes. In this design, the PCR product fragment was cloned into pPIC9 plasmids and transferred into Pichia pastoris GS115 by electroporation. The constructed strain was named pp.pPIC9/GOX. This strain was selected as a host for the other synthetic construct called pGAPZ/GOX. The strain pp.pPIC9/GOX was transformed as the host for the pGAPZ/GOX construct containing the glucose oxidase gene, which is controlled by the pGAPZa promoter with a self-inducing promoter and the newly constructed strain named pp.pPGAPZ/PIC9/GOX. The expression and comparison of the glucose oxidase activity were investigated by combining methanol and self-induction promoter in both pp.pPIC9/GOX and pp.pPGAPZ/PIC9/GOX strains simultaneously, which led to higher glucose oxidase gene activity in the new strain. Using the methanol induction promoter with the simultaneous expression of self-induction promoter in separate constructs and same strains increased the glucose oxidase gene activity.https://jsciences.ut.ac.ir/article_85328_cbd507a4de445ba8936d42b9751b7b4e.pdfUniversity of TehranJournal of Sciences, Islamic Republic of Iran1016-110433120220301Construction a Novel Optode for Quantitative Measurement of Ag+ Cation in Solutions Based on Covalent Immobilization of Thiazole Yellow on Triacetyl Cellulose Films19268509410.22059/jsciences.2021.331883.1007675ENNonaHabibiDepartment of Chemistry, Mashhad Branch, Islamic Azad University, Mashhad, Islamic Republic of IranGholam HoseinRounaghiDepartment of Chemistry, Mashhad Branch, Islamic Azad University, Mashhad, Islamic Republic of IranMahmoodEbrahimiDepartment of Chemistry, Mashhad Branch, Islamic Azad University, Mashhad, Islamic Republic of IranJournal Article20211006To measure the concentration of Ag<sup>+</sup> cation in solutions, a new optical chemical sensor was fabricated by covalent immobilization of Thiazole yellow dye on a triacetyl cellulose film via a linker, called epichlorohydrin. The interaction between the Ag<sup>+</sup> cation and immobilized Thiazol yellow molecules was investigated using UV-Vis spectrophotometry. The fabricated optode indicated a range from 3×10 <sup>-7 </sup>to 2.5×10<sup>-5 </sup>M regarding to the concentration of Ag<sup>+ </sup>cation at pH 6 and the detection limit was searched to be: 0.8×10<sup>-7</sup> M. The constructed optical chemical sensor, shows a long-term stability, good reproducibility and repeatability,and also satisfied selectivity and sensitivity. The sensor response to Ag<sup>+ </sup>cation is absolutely invertible and it can be reproduced simply with a solution of EDTA (ethylenediamine tetra acetic acid) in about 5 minutes. The response time is 10 minutes. The fabricated optode can be employed successfully to determine the concentration of Ag<sup>+ </sup>cation in actual sample solutions.https://jsciences.ut.ac.ir/article_85094_378556588ac6e7c339ad16abffe8348a.pdfUniversity of TehranJournal of Sciences, Islamic Republic of Iran1016-110433120220301Biostratigraphy of Foraminifera at The Upper Cretaceous and Lower Paleogene Strata in The Kuh-E Genu, Bandar Abbas City, Northwestern Persian Gulf, Southern Iran27448504210.22059/jsciences.2021.332097.1007678ENNadiaFarsi1 Department of Geology, North Tehran Branch, Islamic Azad University, Hakimieh, Shahid Babaei Highway, Tehran, 1651153311, Islamic Republic of Iran0000-0002-9626-1760MohammadGhavidel- Syooki2 Institute of Petroleum Engineering, Faculty of Engineering, University of Tehran, Tehran, 11365-4563, Islamic Republic of Iran0000-0003-4035-8069Seyed AhmadBabazadeh3 Department of Science, Payame Noor University, PO Box 19395-3697, Tehran, Islamic Republic of IranHamidVaziri1 Department of Geology, North Tehran Branch, Islamic Azad University, Hakimieh, Shahid Babaei Highway, Tehran, 1651153311, Islamic Republic of IranJournal Article20211012The study area is located in Tang-e Bagh at Kuh-e Genu, approximately 69 km, northern Persian Gulf. The age relationships of Sarvak, Gurpi, and Pabdeh formations were unclear in the study area because of the low-resolution biostratigraphy. Therefore, 152 samples were collected. All samples contain well-preserved foraminifers that permit clarification of the age of these formations. Nine benthic species (5 genera) and sixty-eight planktonic foraminiferal species (29 genera) were identified that were arranged eleven biozones with high resolution of biostratigraphy. Biozone Ⅰ corresponds to the total range of Orbitolina qatarica in the Mauddud Member of Sarvak Formation, suggesting the Cenomanian (middle Cenomanian) age. The biozone Ⅱ is characterized by the total range of Dicarinella asymetrica in the basal part of Gurpi Formation, indicating the Santonian age. Therefore, there is a hiatus between the Sarvak and Gurpi formations that includes part of the Mauddud Member, the whole Ahmadi Member, and the Ilam Formation. This hiatus encompasses the late Cenomanian to Coniacian that is marked by a few meters of Fe-stained deposits in the Kuh-e Genu; the interval range zones Ⅲ to Ⅶ as well as Abathomphalus mayaroensis zone Ⅷ (TRZ) are present within the rest of Gurpi Formation and suggests the Campanian to Maastrichtian. The biozones IX-XI are present within the Pabdeh Formation that corresponds to a Not Zone and two interval range zones (P1b, P1c-P2), suggesting Danian. Based on microfacies, texture, and paleontological analysis, a deep-water environment suggests for Gurpi and Pabdeh formations and shallow marine conditions for Sarvak Formation.https://jsciences.ut.ac.ir/article_85042_1d3c8e6d0a176400666082e55adc7c4d.pdfUniversity of TehranJournal of Sciences, Islamic Republic of Iran1016-110433120220301Binomial Thinning Integer-Valued AR (1) with Poisson – α Fold Zero Modified Geometric Innovations55638504510.22059/jsciences.2021.320996.1007633ENMaryamShalbafDepartment of Statistics, Faculty of Mathematical Sciences and Computer Shahid Chamran University of Ahvaz, Ahvaz, Islamic Republic of IranGholamaliParhamDepartment of Statistics, Faculty of Mathematical Sciences and Computer Shahid Chamran University of Ahvaz, Ahvaz, Islamic Republic of Iran0000-0001-6574-9213RahimChinipardazDepartment of Statistics, Faculty of Mathematical Sciences and Computer Shahid Chamran University of Ahvaz, Ahvaz, Islamic Republic of Iran0000-0003-1058-4735Journal Article20210323Real count data time series often show the phenomenon of the overdispersion. In this paper, we introduce the first-order integer-valued autoregressive process. The univariate <em>marginal<strong> </strong>distribution</em> is derived from the Delaporte distribution and the innovations are convolution of Poisson with -fold zero modified geometric distribution, based on binomial thinning operator, for modelling integer-valued time series with overdispersion. Some properties of the model are derived. The methods of Yule–Walker, conditional lea st squares and conditional maximum likelihood are used for estimating of the parameters, and their asymptotic properties are established. The Monte Carlo experiment is conducted to evaluate the performances of these estimators in finite samples. The model is fitted to time series of the weekly number of syphilis cases that are overdispersed count data.https://jsciences.ut.ac.ir/article_85045_9da6725a09684165e1739b6f3f38b087.pdfUniversity of TehranJournal of Sciences, Islamic Republic of Iran1016-110433120220301Estimating Cumulative Distribution Function Using Gamma Kernel45548504310.22059/jsciences.2021.324868.1007652ENBehzadMansouriDepartment of Statistics, Faculty of Mathematical Sciences and Computer, Shahid Chamran University of Ahvaz, Ahvaz, Islamic Republic of IranSamiAtiyah Sayyid Al-FarttosiDepartment of Statistics, Faculty of Mathematical Sciences and Computer, Shahid Chamran University of Ahvaz, Ahvaz, Islamic Republic of IranHabiballahMombeniDepartment of Statistics, Faculty of Mathematical Sciences and Computer, Shahid Chamran University of Ahvaz, Ahvaz, Islamic Republic of IranRahimChinipardazDepartment of Statistics, Faculty of Mathematical Sciences and Computer, Shahid Chamran University of Ahvaz, Ahvaz, Islamic Republic of Iran0000-0003-1058-4735Journal Article20210602In this article, we propose the gamma kernel estimator for the cumulative distribution functions with nonnegative support. We derive the asymptotic bias and variance of the proposed estimator in both boundary and interior regions and show that it is free of boundary bias. We also obtain the optimal smoothing parameter which minimizes the mean integrated square error (MISE). In addition to consistency, we prove the almost sure convergence of the proposed estimator and show that it follows the same approximate normal distribution as empirical distribution. We presented a simulation study to compare the performance of the proposed estimator with other estimators. We use the proposed estimator to estimate the cumulative probability distribution function of the food expenses for urban households in Iran.https://jsciences.ut.ac.ir/article_85043_b47142e9d110a1a5db3c81bdcac99ffb.pdfUniversity of TehranJournal of Sciences, Islamic Republic of Iran1016-110433120220301Cylindrical Surface Wave Propagation on a Thin Plasma Layer65708504710.22059/jsciences.2021.318995.1007625ENNedaKhoddamDepartment of Physics, Faculty of Sciences, University of Arak, Arak, Islamic Republic of Iran0000-0002-1810-3206MehranShahmansouriDepartment of Physics, Faculty of Sciences, University of Arak, Arak, Islamic Republic of Iran0000-0002-1810-3206Journal Article20210315The surface waves propagating in a cylindrical thin plasma layer are studied. The cylindrical plasma layer is sandwiched between two regions of different dielectric constants. The linear dispersion relation is obtained by starting from the fluid model and Maxwell’s equations. It is found that a hybridization occurred between the plasmonic oscillations and the acoustic excitation, which leads to a new surface mode in the present plasma system. Furthermore, it can be seen that the wave frequency is significantly tunable due to the optimization of the plasma parameters and the cylindrical geometry. Surface mode frequency can increase by increasing Fermi speed at low frequencies and approaching the light speed line. Using the present plasma layer model not only leads to a new coupling between the plasmonic oscillations and the acoustic excitation, but also provides a new mode that is more controllable due to the additional parameters of the model. The present results should be applicable for understanding the basic characteristics of plasma antenna, enantiomeric sensing devices and plasma-sensing based waveguides.https://jsciences.ut.ac.ir/article_85047_cd9420cc51844fd5fe446fe15c528471.pdf